Detailed information of SNP:
|
SNP ID:
sf0132070437(Gbrowse)
Chromosome: chr01 Position: 32070437 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 73.85% | 26.15% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 497 | 27.57% | 72.43% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132070437 | T->C | LOC_Os01g55670(LOC_Os01g55670.1) | INTRON |