Detailed information of SNP:
|
SNP ID:
sf0132084282(Gbrowse)
Chromosome: chr01 Position: 32084282 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 74.10% | 25.90% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 496 | 27.82% | 72.18% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 4.49% | 95.51% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132084282 | T->C | INTERGENIC | None |