Detailed information of SNP:
|
SNP ID:
sf0132113528(Gbrowse)
Chromosome: chr01 Position: 32113528 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 80.23% | 19.77% |
| All Indica | 796 | 67.46% | 32.54% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 374 | 44.12% | 55.88% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 76.08% | 23.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132113528 | C->T | INTERGENIC | None |