Detailed information of SNP:
|
SNP ID:
sf0132157374(Gbrowse)
Chromosome: chr01 Position: 32157374 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 83.14% | 16.86% |
| All Indica | 787 | 78.65% | 21.35% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 7.58% | 92.42% |
| Indica I | 366 | 62.84% | 37.16% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 85.10% | 14.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132157374 | G->A | INTERGENIC | None |