Detailed information of SNP:
|
SNP ID:
sf0132157640(Gbrowse)
Chromosome: chr01 Position: 32157640 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 50.18% | 49.82% |
| All Indica | 798 | 72.68% | 27.32% |
| All Japonica | 497 | 18.51% | 81.49% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 54.81% | 45.19% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132157640 | T->C | INTERGENIC | None |