Detailed information of SNP:
|
SNP ID:
sf0132160609(Gbrowse)
Chromosome: chr01 Position: 32160609 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 54.20% | 45.80% |
| All Indica | 797 | 34.76% | 65.24% |
| All Japonica | 497 | 81.49% | 18.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 55.73% | 44.27% |
| Indica II | 212 | 2.83% | 97.17% |
| Indica Intermediate | 210 | 29.52% | 70.48% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132160609 | T->C | INTERGENIC | None |