Detailed information of SNP:
|
SNP ID:
sf0132175881(Gbrowse)
Chromosome: chr01 Position: 32175881 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 83.01% | 16.99% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 453 | 50.99% | 49.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 296 | 32.09% | 67.91% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 63 | 71.43% | 28.57% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132175881 | T->C | INTERGENIC | None |