Detailed information of SNP:
|
SNP ID:
sf0132203101(Gbrowse)
Chromosome: chr01 Position: 32203101 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 88.37% | 11.63% |
| All Indica | 767 | 80.57% | 19.43% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 352 | 65.34% | 34.66% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 202 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132203101 | G->A | INTERGENIC | None |