Detailed information of SNP:
|
SNP ID:
sf0132242380(Gbrowse)
Chromosome: chr01 Position: 32242380 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 83.57% | 16.43% |
| All Indica | 790 | 72.03% | 27.97% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 85.95% | 14.05% |
| Indica II | 211 | 40.76% | 59.24% |
| Indica Intermediate | 209 | 78.95% | 21.05% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 81.58% | 18.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132242380 | A->G | LOC_Os01g56000(LOC_Os01g56000.1) | Synonymous |