Detailed information of SNP:
|
SNP ID:
sf0132255336(Gbrowse)
Chromosome: chr01 Position: 32255336 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 72.02% | 27.98% |
| All Indica | 799 | 59.95% | 40.05% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 70.40% | 29.60% |
| Indica II | 213 | 66.67% | 33.33% |
| Indica Intermediate | 211 | 34.60% | 65.40% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132255336 | T->C | INTERGENIC | None |