Detailed information of SNP:
|
SNP ID:
sf0132256130(Gbrowse)
Chromosome: chr01 Position: 32256130 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 71.97% | 28.03% |
| All Indica | 795 | 95.85% | 4.15% |
| All Japonica | 496 | 28.63% | 71.37% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132256130 | T->C | INTERGENIC | None |