Detailed information of SNP:
|
SNP ID:
sf0132262088(Gbrowse)
Chromosome: chr01 Position: 32262088 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1354 | 94.46% | 5.54% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 433 | 83.83% | 16.17% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 277 | 89.89% | 10.11% |
| Tropical Japonica | 92 | 93.48% | 6.52% |
| Japonica Intermediate | 64 | 43.75% | 56.25% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132262088 | T->C | INTERGENIC | None |