Detailed information of SNP:
|
SNP ID:
sf0132270397(Gbrowse)
Chromosome: chr01 Position: 32270397 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 75.66% | 24.34% |
| All Indica | 795 | 71.45% | 28.55% |
| All Japonica | 490 | 81.22% | 18.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 47.47% | 52.53% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 209 | 88.04% | 11.96% |
| Temperate Japonica | 329 | 99.39% | 0.61% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132270397 | C->T | LOC_Os01g56050(LOC_Os01g56050.1) | Non-Synonymous SNP |