Detailed information of SNP:
|
SNP ID:
sf0132277555(Gbrowse)
Chromosome: chr01 Position: 32277555 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 71.40% | 28.60% |
| All Indica | 795 | 71.70% | 28.30% |
| All Japonica | 492 | 79.88% | 20.12% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 48.00% | 52.00% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 209 | 88.04% | 11.96% |
| Temperate Japonica | 333 | 97.00% | 3.00% |
| Tropical Japonica | 93 | 9.68% | 90.32% |
| Japonica Intermediate | 66 | 92.42% | 7.58% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132277555 | C->T | INTERGENIC | None |