Detailed information of SNP:
|
SNP ID:
sf0132290150(Gbrowse)
Chromosome: chr01 Position: 32290150 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 79.97% | 20.03% |
| All Indica | 797 | 78.67% | 21.33% |
| All Japonica | 496 | 81.65% | 18.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 58.71% | 41.29% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 9.68% | 90.32% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132290150 | G->A | INTERGENIC | None |