Detailed information of SNP:
|
SNP ID:
sf0132360732(Gbrowse)
Chromosome: chr01 Position: 32360732 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 84.99% | 15.01% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 497 | 65.79% | 34.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 51.94% | 48.06% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132360732 | A->G | INTERGENIC | None |