Detailed information of SNP:
|
SNP ID:
sf0132367289(Gbrowse)
Chromosome: chr01 Position: 32367289 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 69.84% | 30.16% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 16.30% | 83.70% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132367289 | G->C | LOC_Os01g56200(LOC_Os01g56200.2) | Non-Synonymous SNP |
| sf0132367289 | G->C | LOC_Os01g56200(LOC_Os01g56200.1) | Non-Synonymous SNP |