Detailed information of SNP:
|
SNP ID:
sf0132375906(Gbrowse)
Chromosome: chr01 Position: 32375906 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1304 | 90.80% | 9.20% |
| All Indica | 689 | 83.74% | 16.26% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 327 | 91.74% | 8.26% |
| Indica II | 166 | 64.46% | 35.54% |
| Indica Intermediate | 196 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132375906 | C->T | INTERGENIC | None |