Detailed information of SNP:
|
SNP ID:
sf0132376374(Gbrowse)
Chromosome: chr01 Position: 32376374 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 97.80% | 2.20% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 484 | 93.80% | 6.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 97.87% | 2.13% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 62 | 67.74% | 32.26% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132376374 | G->A | INTERGENIC | None |