Detailed information of SNP:
|
SNP ID:
sf0132392822(Gbrowse)
Chromosome: chr01 Position: 32392822 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1334 | 95.73% | 4.27% |
| All Indica | 746 | 98.66% | 1.34% |
| All Japonica | 468 | 91.03% | 8.97% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 369 | 100.00% | 0.00% |
| Indica II | 206 | 98.54% | 1.46% |
| Indica Intermediate | 171 | 95.91% | 4.09% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 67 | 40.30% | 59.70% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132392822 | C->T | LOC_Os01g56250(LOC_Os01g56250.1) | Synonymous |