Detailed information of SNP:
|
SNP ID:
sf0132410081(Gbrowse)
Chromosome: chr01 Position: 32410081 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 85.68% | 14.32% |
| All Indica | 766 | 75.59% | 24.41% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 367 | 79.29% | 20.71% |
| Indica II | 197 | 72.59% | 27.41% |
| Indica Intermediate | 202 | 71.78% | 28.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132410081 | A->T | LOC_Os01g56270(LOC_Os01g56270.2) | INTRON |
| sf0132410081 | A->T | LOC_Os01g56270(LOC_Os01g56270.1) | INTRON |