Detailed information of SNP:
|
SNP ID:
sf0132415319(Gbrowse)
Chromosome: chr01 Position: 32415319 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 50.99% | 49.01% |
| All Indica | 792 | 84.47% | 15.53% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 66 | 53.03% | 46.97% |
| Indica I | 369 | 92.68% | 7.32% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 211 | 61.61% | 38.39% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132415319 | G->A | LOC_Os01g56280(LOC_Os01g56280.1) | INTRON |