Detailed information of SNP:
|
SNP ID:
sf0132415863(Gbrowse)
Chromosome: chr01 Position: 32415863 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 56.75% | 43.25% |
| All Indica | 779 | 28.50% | 71.50% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 363 | 28.93% | 71.07% |
| Indica II | 208 | 10.10% | 89.90% |
| Indica Intermediate | 208 | 46.15% | 53.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132415863 | G->A | LOC_Os01g56280(LOC_Os01g56280.1) | Non-Synonymous SNP |