Detailed information of SNP:
|
SNP ID:
sf0132459437(Gbrowse)
Chromosome: chr01 Position: 32459437 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 54.20% | 45.80% |
| All Indica | 798 | 89.60% | 10.40% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132459437 | C->T | INTERGENIC | None |