Detailed information of SNP:
|
SNP ID:
sf0132479632(Gbrowse)
Chromosome: chr01 Position: 32479632 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 63.92% | 36.08% |
| All Indica | 799 | 94.62% | 5.38% |
| All Japonica | 497 | 13.48% | 86.52% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132479632 | G->A | INTERGENIC | None |