Detailed information of SNP:
|
SNP ID:
sf0132504903(Gbrowse)
Chromosome: chr01 Position: 32504903 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 85.31% | 14.69% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 496 | 63.31% | 36.69% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 66.47% | 33.53% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132504903 | A->G | INTERGENIC | None |