Detailed information of SNP:
|
SNP ID:
sf0132620585(Gbrowse)
Chromosome: chr01 Position: 32620585 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 67.96% | 32.04% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 496 | 15.12% | 84.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132620585 | T->A | LOC_Os01g56580(LOC_Os01g56580.2) | INTRON |
| sf0132620585 | T->A | LOC_Os01g56580(LOC_Os01g56580.1) | INTRON |