Detailed information of SNP:
|
SNP ID:
sf0132642676(Gbrowse)
Chromosome: chr01 Position: 32642676 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1219 | 96.06% | 3.94% |
| All Indica | 604 | 92.22% | 7.78% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 265 | 88.30% | 11.70% |
| Indica II | 163 | 96.93% | 3.07% |
| Indica Intermediate | 176 | 93.75% | 6.25% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132642676 | G->A | LOC_Os01g56590(LOC_Os01g56590.1) | INTRON |