Detailed information of SNP:
|
SNP ID:
sf0132721353(Gbrowse)
Chromosome: chr01 Position: 32721353 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 83.23% | 16.77% |
| All Indica | 793 | 71.63% | 28.37% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 90.11% | 9.89% |
| Indica II | 213 | 34.27% | 65.73% |
| Indica Intermediate | 206 | 76.70% | 23.30% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132721353 | G->A | INTERGENIC | None |