Detailed information of SNP:
|
SNP ID:
sf0132757197(Gbrowse)
Chromosome: chr01 Position: 32757197 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1382 | 57.81% | 42.19% |
| All Indica | 794 | 96.60% | 3.40% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 39 | 17.95% | 82.05% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 208 | 96.15% | 3.85% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 42.11% | 57.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132757197 | C->T | INTERGENIC | None |