Detailed information of SNP:



SNP ID: sf0132819530(Gbrowse)

Chromosome: chr01

Position: 32819530
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1407 95.10% 4.90%
All Indica799 100.00% 0.00%
All Japonica485 85.98% 14.02%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica323 84.21% 15.79%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 76.47% 23.53%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0132819530 C->T INTERGENIC None