Detailed information of SNP:
|
SNP ID:
sf0132863722(Gbrowse)
Chromosome: chr01 Position: 32863722 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 57.83% | 42.17% |
| All Indica | 798 | 96.62% | 3.38% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132863722 | A->G | INTERGENIC | None |