Detailed information of SNP:
|
SNP ID:
sf0132897124(Gbrowse)
Chromosome: chr01 Position: 32897124 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 82.60% | 17.40% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 492 | 51.02% | 48.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 58.31% | 41.69% |
| Tropical Japonica | 93 | 8.60% | 91.40% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132897124 | A->G | LOC_Os01g56940(LOC_Os01g56940.1) | INTRON |