Detailed information of SNP:
|
SNP ID:
sf0132931459(Gbrowse)
Chromosome: chr01 Position: 32931459 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 82.24% | 17.76% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 492 | 50.81% | 49.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 58.43% | 41.57% |
| Tropical Japonica | 93 | 7.53% | 92.47% |
| Japonica Intermediate | 67 | 73.13% | 26.87% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132931459 | C->T | LOC_Os01g56990(LOC_Os01g56990.1) | INTRON |