Detailed information of SNP:
|
SNP ID:
sf0132935325(Gbrowse)
Chromosome: chr01 Position: 32935325 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 56.75% | 43.25% |
| All Indica | 796 | 56.66% | 43.34% |
| All Japonica | 496 | 53.02% | 46.98% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 58.98% | 41.02% |
| Indica II | 212 | 69.34% | 30.66% |
| Indica Intermediate | 211 | 39.81% | 60.19% |
| Temperate Japonica | 334 | 43.71% | 56.29% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132935325 | A->G | INTERGENIC | None |