Detailed information of SNP:
|
SNP ID:
sf0132936084(Gbrowse)
Chromosome: chr01 Position: 32936084 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1320 | 80.30% | 19.70% |
| All Indica | 798 | 75.19% | 24.81% |
| All Japonica | 401 | 96.76% | 3.24% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 374 | 53.21% | 46.79% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 282 | 95.39% | 4.61% |
| Tropical Japonica | 68 | 100.00% | 0.00% |
| Japonica Intermediate | 51 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132936084 | G->A | INTERGENIC | None |