Detailed information of SNP:
|
SNP ID:
sf0132937921(Gbrowse)
Chromosome: chr01 Position: 32937921 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1365 | 84.10% | 15.90% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 445 | 53.26% | 46.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 311 | 61.74% | 38.26% |
| Tropical Japonica | 68 | 13.24% | 86.76% |
| Japonica Intermediate | 66 | 54.55% | 45.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132937921 | G->A | INTERGENIC | None |