Detailed information of SNP:
|
SNP ID:
sf0132946780(Gbrowse)
Chromosome: chr01 Position: 32946780 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 51.03% | 48.97% |
| All Indica | 791 | 23.89% | 76.11% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 47.33% | 52.67% |
| Indica II | 211 | 0.47% | 99.53% |
| Indica Intermediate | 206 | 5.34% | 94.66% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132946780 | G->A | INTERGENIC | None |