Detailed information of SNP:
|
SNP ID:
sf0132954187(Gbrowse)
Chromosome: chr01 Position: 32954187 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 50.92% | 49.08% |
| All Indica | 795 | 23.77% | 76.23% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 373 | 47.72% | 52.28% |
| Indica II | 212 | 0.47% | 99.53% |
| Indica Intermediate | 210 | 4.76% | 95.24% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132954187 | A->G | INTERGENIC | None |