Detailed information of SNP:
|
SNP ID:
sf0132956695(Gbrowse)
Chromosome: chr01 Position: 32956695 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1333 | 82.60% | 17.40% |
| All Indica | 716 | 70.95% | 29.05% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 329 | 72.64% | 27.36% |
| Indica II | 209 | 90.43% | 9.57% |
| Indica Intermediate | 178 | 44.94% | 55.06% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132956695 | C->T | LOC_Os01g57066(LOC_Os01g57066.1) | INTRON |