Detailed information of SNP:
|
SNP ID:
sf0132987887(Gbrowse)
Chromosome: chr01 Position: 32987887 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1317 | 78.59% | 21.41% |
| All Indica | 795 | 77.99% | 22.01% |
| All Japonica | 402 | 74.88% | 25.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 55.26% | 44.74% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 251 | 89.24% | 10.76% |
| Tropical Japonica | 88 | 21.59% | 78.41% |
| Japonica Intermediate | 63 | 92.06% | 7.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0132987887 | T->C | LOC_Os01g57082(LOC_Os01g57082.1) | Non-Synonymous SNP |