Detailed information of SNP:
|
SNP ID:
sf0133074664(Gbrowse)
Chromosome: chr01 Position: 33074664 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 70.62% | 29.38% |
| All Indica | 790 | 66.33% | 33.67% |
| All Japonica | 496 | 75.60% | 24.40% |
| Aus | 35 | 94.29% | 5.71% |
| Indica I | 373 | 84.45% | 15.55% |
| Indica II | 211 | 32.23% | 67.77% |
| Indica Intermediate | 206 | 68.45% | 31.55% |
| Temperate Japonica | 334 | 65.87% | 34.13% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133074664 | T->A | LOC_Os01g57240(LOC_Os01g57240.1) | INTRON |