Detailed information of SNP:
|
SNP ID:
sf0133084207(Gbrowse)
Chromosome: chr01 Position: 33084207 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 65.58% | 34.42% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 495 | 23.64% | 76.36% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 334 | 32.93% | 67.07% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133084207 | T->G | INTERGENIC | None |