Detailed information of SNP:
|
SNP ID:
sf0133087966(Gbrowse)
Chromosome: chr01 Position: 33087966 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 67.42% | 32.58% |
| All Indica | 798 | 42.98% | 57.02% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 17.65% | 82.35% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 38.86% | 61.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133087966 | T->G | INTERGENIC | None |