Detailed information of SNP:
|
SNP ID:
sf0133175264(Gbrowse)
Chromosome: chr01 Position: 33175264 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 64.48% | 35.52% |
| All Indica | 798 | 41.23% | 58.77% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 374 | 15.78% | 84.22% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 36.97% | 63.03% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133175264 | G->A | INTERGENIC | None |