Detailed information of SNP:
|
SNP ID:
sf0133175459(Gbrowse)
Chromosome: chr01 Position: 33175459 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 64.61% | 35.39% |
| All Indica | 796 | 41.33% | 58.67% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 373 | 15.55% | 84.45% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 211 | 37.44% | 62.56% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133175459 | C->T | INTERGENIC | None |