Detailed information of SNP:
|
SNP ID:
sf0133207107(Gbrowse)
Chromosome: chr01 Position: 33207107 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 57.94% | 42.06% |
| All Indica | 798 | 96.87% | 3.13% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133207107 | T->A | LOC_Os01g57460(LOC_Os01g57460.1) | UTR_3_PRIME |
| sf0133207107 | T->A | LOC_Os01g57470(LOC_Os01g57470.1) | Non-Synonymous SNP |