Detailed information of SNP:
|
SNP ID:
sf0133207176(Gbrowse)
Chromosome: chr01 Position: 33207176 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 58.26% | 41.74% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133207176 | A->C | LOC_Os01g57460(LOC_Os01g57460.1) | UTR_3_PRIME |
| sf0133207176 | A->C | LOC_Os01g57470(LOC_Os01g57470.1) | UTR_5_PRIME |