Detailed information of SNP:
|
SNP ID:
sf0133228409(Gbrowse)
Chromosome: chr01 Position: 33228409 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 61.24% | 38.76% |
| All Indica | 799 | 96.87% | 3.13% |
| All Japonica | 497 | 9.66% | 90.34% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 12.54% | 87.46% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133228409 | C->T | LOC_Os01g57510(LOC_Os01g57510.1) | INTRON |