Detailed information of SNP:
|
SNP ID:
sf0133230262(Gbrowse)
Chromosome: chr01 Position: 33230262 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 53.10% | 46.90% |
| All Indica | 799 | 91.86% | 8.14% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 29.27% | 70.73% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133230262 | C->T | LOC_Os01g57510(LOC_Os01g57510.1) | Synonymous |